RSA-tools - patser

Scan a DNA sequence with a posiion-specific scoring matrix (PSSM)
Program developed by Jerry Hertz. Web interface by Jacques van Helden.
The stand-alone version of patser is available at http://ural.wustl.edu/software.html



Sequence       Format Paste your sequence in the box below

Or select a file to upload (.gz compressed files supported)


Mask 

Patser options

Matrix        Format             

Search strands 
Return   top value(s) for each sequence
Output format 

Pseudo-counts
Lower threshold estimation
Upper threshold      
Alphabet
Case       
Treat unrecognized characters as   


Origin            flanking
Output